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SARS-CoV-2 Delta variant

The Delta variant (B.1.617.2) was[3][4] a variant of SARS-CoV-2, the virus that causes COVID-19. It was first detected in India on 5 October 2020. The Delta variant was named on 31 May 2021 and had spread to over 179 countries by 22 November 2021. The World Health Organization (WHO) indicated in June 2021 that the Delta variant was becoming the dominant strain globally.[5]

For lineage B.1.617.1, see SARS-CoV-2 Kappa variant.

It has mutations in the gene encoding the SARS-CoV-2 spike protein[6] causing the substitutions T478K, P681R and L452R,[7][8] which are known to affect transmissibility of the virus as well as whether it can be neutralised by antibodies for previously circulating variants of the COVID-19 virus.[9] In August 2021, Public Health England (PHE) reported secondary attack rate in household contacts of non-travel or unknown cases for Delta to be 10.8% vis-à-vis 10.2% for the Alpha variant;[10] the case fatality rate for those 386,835 people with Delta is 0.3%, where 46% of the cases and 6% of the deaths are unvaccinated and below 50 years old.[11] Immunity from previous recovery[12][13] or COVID-19 vaccines are effective in preventing severe disease or hospitalisation from infection with the variant.[14]


On 7 May 2021, PHE changed their classification of lineage B.1.617.2 from a variant under investigation (VUI) to a variant of concern (VOC) based on an assessment of transmissibility being at least equivalent to B.1.1.7 (Alpha variant);[15] the UK's SAGE using May data estimated a "realistic" possibility of being 50% more transmissible.[16] On 11 May 2021, the WHO also classified this lineage VOC, and said that it showed evidence of higher transmissibility and reduced neutralisation. On 15 June 2021, the Centers for Disease Control and Prevention (CDC) declared Delta a variant of concern.[17]


The variant is thought to be partly responsible for India's deadly second wave of the pandemic beginning in February 2021.[18][19][20] It later contributed to a third wave in Fiji, the United Kingdom[21][22][23] and South Africa,[24] and the WHO warned in July 2021 that it could have a similar effect elsewhere in Europe and Africa.[25][24] By late July, it had also driven an increase in daily infections in parts of Asia,[26] the United States,[27] Australia, and New Zealand.[28]

Amino acid mutations of SARS-CoV-2 Delta variant plotted on a genome map of SARS-CoV-2 with a focus on Spike[37]

Amino acid mutations of SARS-CoV-2 Delta variant plotted on a genome map of SARS-CoV-2 with a focus on Spike[37]

Extinction

In October 2021, Dr Jenny Harries, chief executive of the UK Health and Security Agency stated that previous circulating variants such as Alpha had 'disappeared' and replaced by the Delta variant.[236] In March 2022, the World Health Organization listed the Alpha, Beta and Gamma variants as previously circulating citing lack of any detected cases in the prior weeks and months, in part due to the dominance of the Delta variant and subsequent Omicron variant.[237] However within a few months the Delta variant was listed as a previously circulated variant with countries such as Australia going 12 weeks without any detections of Delta.[4]

: Alpha, Beta, Gamma, Epsilon, Zeta, Eta, Theta, Iota, Kappa, Lambda, Mu, Omicron, Lineage B.1.617

Variants of SARS-CoV-2

Public Health England: Variants of concern or under investigation, B.1.617